PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG036300.5.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 472aa    MW: 49778.9 Da    PI: 5.8972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG036300.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH573.5e-18281327455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn+ ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  Pavir.2NG036300.5.p 281 VHNMSERRRRDRINEKMRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 327
                          6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.56E-18272331No hitNo description
SuperFamilySSF474591.28E-21275342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.743277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-22281336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-15281327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-18283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MPDAPLSQTD AAHGFLRSLN LGERRESVPG FSVLRRLVGA SLVLPTAELL RTSCGALLQE  60
EAGGRRYLGA PGSKKWILAM DGGERPAAAQ KRPFPPDGEL VELLWQDGAV VAHSQAQRAF  120
AGAGNTGASG VTGEAAAAAW LPGGGALGGD VYSQLWQSIA LAQADGRVGA PARARPPAQS  180
GNSAAGSSRT AGEVGSSFCG SNLVAAARHL DDAIDDVAAL PPQPPDEPGA STSSGWNSNA  240
LLKRSRDDCD GRSEDADFDT VDETPPSRRP ASKRRTRAAE VHNMSERRRR DRINEKMRAL  300
QELVPHCNKT DKASILDEAI EYLKSLQMQV QIMWMSTGMA PMMLPGAHQL MPPMSMGLNS  360
TCMPPAAQFL SHVQTVPPFL SNPLPNQIPQ ISPAFTSAPN VTNQVQSNRV AQPRNPFLHP  420
NDALTSTPQL PSLFGYGPQM AQENEIQELL ACTAAPALDA EPPSSSDGTG T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272289KRRTRAAEVHNMSERRRR
2285290ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955437.10.0PREDICTED: transcription factor PIF4-like
TrEMBLK3ZTU80.0K3ZTU8_SETIT; Uncharacterized protein
STRINGSi030028m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-33phytochrome interacting factor 3